GgaALTD0005050-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36059495-36060323:-
Coord C1 exon
chr7:36060118-36060323
Coord A exon
chr7:36060013-36060117
Coord C2 exon
chr7:36059495-36059630
Length
105 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TTCTCTATATTTCACTGCAGAAC
3' ss Score
8.7
Exon sequences
Seq C1 exon
GGCTGGCTGTGTCCTGAACCTGCATCAGAAAGAGAAGACTTGGTATATCATGAACATAAGTCAATTATTAGATTGCACAAGAAATACGATGGAGATAGTGCTGGAGGCGGAGAAGGCAGTACCAGCTCTCTAGAGCGGAAGAATGACAACCCTCTAGATATAGCTGTAACCAGACTTGCTGACTTGGAGCGGAACATAGAGCGAAG
Seq A exon
GTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGG
Seq C2 exon
AACTGAAGAGGATATTGCTCCAGGGCTGAGGGTATGGAGAAAGGCGTTGTCAGAAGCACGAAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCGATAGCATGGGAAAAATCTATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-59-64,60-64-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTCCTGAACCTGCATC
R:
TTCTCCATACCCTCAGCCCTG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]