DreALTD0004095-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11756193-11759375:+
Coord C1 exon
chr6:11756193-11756389
Coord A exon
chr6:11756390-11756494
Coord C2 exon
chr6:11759240-11759375
Length
105 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
TGTGTTTTTGTGTGTTCCAGGGG
3' ss Score
11.73
Exon sequences
Seq C1 exon
GGCTGGACATACCCAGAGCCGCAGTCTGAGAGAGAGGACCTTGTCTATTTCGAGCACAAGCCCCTCCCCAAGCACCGCCCTGGGGCGGAGTCTCAGGAGGAGCGCAGCTCGGAGAAGGGTCTGATCCGGCGCCCCAGCAACCCGCTGGACATCGCTGTGATGCGGCTGGCAGAGCTGGAGCGCCACATCGAGAGAAG
Seq A exon
GTACCTGCGGAGCCCCTTAGGGACCACCATCCAGATCAAACTGGATAATGTGGGTACAGTCACTGTCCCCGCACCTGCTCCATCCACTAGCGCTGGAGGGGAAGG
Seq C2 exon
GGGAGAGGAAGAGATTGCTCCAGGAATGAAGCTCTGGCGGAAAGCTTTGAGTGAGGTGCGCAGCTCCTCTCAGCTGGCCATGTGTCTGCAGCAGCTGCAGAAGTCCATCGCCTGGGAAAAGTCTATCATGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-46-42,47-42,48-42-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATTTCGAGCACAAGCCCC
R:
CAGACACATGGCCAGCTGAG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]