GgaALTD0005050-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38195832-38196660:-
Coord C1 exon
chr7:38196455-38196660
Coord A exon
chr7:38196350-38196454
Coord C2 exon
chr7:38195832-38195967
Length
105 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TTCTCTATATTTCACTGCAGAAC
3' ss Score
8.7
Exon sequences
Seq C1 exon
GGCTGGCTGTGTCCTGAACCTGCATCAGAAAGAGAAGACTTGGTATATCATGAACATAAGTCAATTATTAGATTGCACAAGAAATACGATGGAGATAGTGCTGGAGGCGGAGAAGGCAGTACCAGCTCTCTAGAGCGGAAGAATGACAACCCTCTAGATATAGCTGTAACCAGACTTGCTGACTTGGAGCGGAACATAGAGCGAAG
Seq A exon
GTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGG
Seq C2 exon
AACTGAAGAGGATATTGCTCCAGGGCTGAGGGTATGGAGAAAGGCGTTGTCAGAAGCACGAAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCGATAGCATGGGAAAAATCTATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-44-49,45-49-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTCCTGAACCTGCATC
R:
TTCTCCATACCCTCAGCCCTG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]