RnoALTD0004357-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45976791-45977629:-
Coord C1 exon
chr3:45977424-45977629
Coord A exon
NA
Coord C2 exon
chr3:45976791-45976926
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTCTCTATATCTCAATGCAGAGT
3' ss Score
6.63
Exon sequences
Seq C1 exon
GGTTGGATGTGTCCAGAGCCTGCGTCAGAAAGGGAGGACTTGGTATATTTTGAACATAAGTCATTTACTAAGTTGTCCAAGGAGCATGATGGAGAACTTACTGGTGACGAAGAAAACAGTGCTCATGCACTGGCACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAGAGAAG
Seq A exon
NA
Seq C2 exon
AGTTGAAGAGGACATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCGTTAGCAGAGGCTCGCAGTGCTGCACAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-54-58,55-58-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTCAGAAAGGGAGGACT
R:
CTCTGCTAACGCCCTTCTCCA
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]