RnoINT0024835 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45977319-45981718:-
Coord C1 exon
chr3:45981558-45981718
Coord A exon
chr3:45977630-45981557
Coord C2 exon
chr3:45977319-45977629
Length
3928 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
ATTCTTTTCTTGATGTATAGGGT
3' ss Score
5.8
Exon sequences
Seq C1 exon
TTGCTATTATTGAATTAAATGAGAATGAAGAAAATCAGGTAACGCGCGATTTAGTGGAGAACTGGTCGGTAGAAGAGCAGGCGATGGAGCTGGACCTGAGCATTCTCCAGCAAGTGGAGGACCTGGAACGCAGGGTTGCATCCGCAAGCTTGCAAGTGAAG
Seq A exon
GTAAAGCTGGCGTGGTACAGAGTGTGTGTAGGGTAGTGGAGGGTGATTAATTTAGTATATGCGCAGTCAAAACTCGTTATTGTGCTAGACATTTTACATTATTTCATTTAATTCTCAAAACAGTCCTGAGTGAATTTCTCCCATCTTCCAGGTAAAGAAACAGGCTCGATATAAATAATCCTCCAATCTTCATTTACGTGGCAAAGAACGTGTGCAAACTACATGCTTTGAGTAGTATAGGCTGGTTTCCTACAGCTCGTGGTCTCCTCAATGGTAGTCACAGAAATATTTTCTGGTGTGGAGTTCTTTACCTTAAGCGAATTGTTGTTTTCATCATGAGGAATACAGTTTTCCCTGTAAATCTTATCAGAGTCCTACTGTAGTGTTTCATGGGAGACCTAGAATCCCCTCAGTTATAACTGTCACATGTCACAGTTTTACTCTGTACAATTTAAGGTCAAAGGCATGTCAGACATTAGGACTTGTGTTGTAGCCAAGCAGACACTCCCTGAGCGCACATTCGTGAGCTCTGAGGTCTTTATCTGGTCAGAGCTGAGAGAGGCAGAAGGAAGGCTCGTCCTGTGCACGAGGTACGTAGGGTTGAAGAGGGGGCAGTGGAAGGTCCTGCGTGTTGACTAAGCAGAGAAACCTGCAGACTGGGGACTCTGTCACTCCACTTGCTATTTATACTTTATTCAGAAGGAAAATGTAGGCATAATCCTGTCCTGCCCAGTAATTTAAATTTTGCTTCATAATTAGTTCTCAAGGTCTCCCAATTCTGTCATTTTCCAGAGTTAATATGATCTCCCTTCTCTGCCACAAACATAATTACTGGCAAATGTATCACTTCCTCATGCTGCTGTGCTGTAGACCTGCACATCTCCTCCCAGTCTGCACACCATCCACAGCCTCGTTTATGTGGCATCTTCAACAAAGGCACTCTTCCACACAAGTTAATTTTCTGGAGAAGTGAAAATTATTCCATTTAGTGCCATAAATTTTTTAAAACATGTTTGTTGGATCTGCTAGTTTATGCCTTTCACTGCCTCCTTAAATTGAGAATAATTAGTGTAATTTGCATTGTCTTGGTGACACAATATTACTAGCACGAACACCAATTATCAGGCTGTGGGCCCAGGAAATGTCAGAGGTTTTCCTGTGTGTTAAATATTGCTTCCCAGCACACCGCGTCTGCTCTCCATGCTCTGACTTTCCCTACCTCGACTACTACTTGTTGTTCATGTGGTTTTAATTTTCCTTCTCCGTATTTGAACTTGCCGGTGTTAGCGGACCAGGAGTTGGGAAAGCGTGTTGAGCTTGGCCTGGACCATTCACACTGGATGGCTTGATCCTACCACATCACTGGCTTTCATGCCCATGTTTGTAGTTAGAACATTTTAGAATTCTTGGCAGCTAAAATGAGTAGAATTTGTTGTTTAAGTAATGTATCTTAGCATCCCGTTGTTTTTAAGCTGGTTGTGAATGGTGCTGTAATATTTTGAGAACTGAATTATAGTTTTATTAGTCTTAAATTGTCTTTAAGTGATGAAAAAGTGATAAAAATAATGAGATGTTGTAGTATCTCTTGAAGACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGACAATATTTTTAGCCCAAGGAGCCTGGCATTATGAAGGCACAGTGACCCGTGATGTTGGTCTATAACATACTCGTTTGCATCTTTAGCAACGTTGATGTTTTCTTTGTGCGTTGTGGGACGTCTGACTCTAGCTTTGGTGGTCGAGCATGCTAAAGTCCCGTTACTCCCGCCCTAGATAGCTCTCCTGGCTCCTGTTGTTTTCCCTTCATCATGAGTCCTCTGAAATGGTTTCCTAGGGGTTTCCAAATGGTGTTTCCTAAGAAGCGTGAGGGTCTACAACCTCTCTCTCAGAGCTCTTTAATTTGTACCTTTATCTGGAGATGTGCACAGGTTTGCATGGGACTTTCTGTCCTTATTCTGGCTTTGTCTCCATTACCACTCTCTGAACTGCTGGTCGTCTTTACCATCCCCACCCCTAGACTTTTACTAAGTATGAGCCACGCCAAAAACATCTCTGAACATCTTTGACATGTTGTATTTTTCTGATTCATCAAAGCTGAATTCGCGTTTATCTTTGTCATTATTATTAGCTTCATCTGACTGTACTCTCCAGCGCACAGAACTACTTCAGTCAGACTCCGTTACCCAAAGCATTGAGTTTCCTTTCTAGTTCTAAATCTCACAAGTTTATAGTAATCAACTAATTTATCACATATTTTTAAACAGAATAAATGGAATGAAGCACCTTTGGGCACTGGCACCAAGGGTCGTTTCTAAAGTGACATTTGAACGTCAGCACATGCACATGTGGTCTTCCAGGGACCTTGCAGAAATCAAAATGCACTCACAAGGCTTCTGTTACTTAGCAATCTTGCTTCCCTCTTAGAAGGTGGGAAGGGTTTGTTATAAGTTATTACCGTTATCATATAAGACACTCCTGTGTATCCTGTGTATCCTGTGTATCCTCTCTGCCTTGGCCAGGGCCTCATGCTTGCGGCCCACAAACTCACAACCCCTTCTGTTTCAGCTCTGCATGACACTGGACGTGCCCCCCCAACTTTTTCTTTTCTAGACATAAATATTCTGTTGAGATAAAGGAGGAGATCTGGTCCTAATGCACAGATTAAATTAATAGTTTCTAAAAAGATTAATTTGCAAGGAATTCATTCTGTTTTTTAATAATACTTTGGCACAGTAGCTGGTCTTTATCAGACCATAGATACTAAGTAATTGAATTGAATGTGCTTCTAGTACCCAGAAGGCTTGCCTTGTAGGAAGGTAAGGTGTGGGCACACAGGTGCAGTCCAGTAACTAACCATAAAGAAGTATAGTTTTGCATGTGAACTTTAAAAGAGGGGACTGGTTTCTGCTGGGTATTTGGAAGCTATGAAGAGTTGAGATGTGTAAAATGAGTGAGATCTTGTCAGGCAGAAACCAGGAAAGAGTGCAGTAAGAGGTGGGAGCATGAACAGCACCAGGAACTGAAAACTCACTGTTTAGAGAGGAGCGAGGCACAGTGAACGCACAGTGTGGGTGTCCAAGCAGGCTGTGAGAAGAGCTGTAGATTCAGGTATTTGAATGTCAGTGATTGGGAACTTGTTAAAGCCAGGTAACCTTTAAACTGCGGACAGAGGATCAGTGTGAACGAGCTTGGTTATAAGACACTTCATTTATTCAATCTATGTATATTGTGAGTGCCCATCGCTGTGCTGGAAATCAACAAGTAAAGGCTCACATGGTTCCAGCCCTTTTTGGGAGGTTTATGGGGGAAAGGTTAATGGAATCACCGTGCTGTCAGGAAGGCAAGGCTGTGCAGCGGTTTGGATCCCAGGGGAGCTTTTAGCAGGAGGACGTCACCCCTGCAGGAGTTGAGGGAAGGATCTCCTTCAGGGAATGCTTGCCTGACAGGAGAGCCGTAGAGTGAGTGGACTTCCTGGGTGAAGACAGGAAAGCACTTCAGGGCAAGGGCAATTGCATATGCTAAGGCAGGGAGCTCATGGAACTGGTGGGAATGTGGCCCTACATGGGGCACGCAGTCAGGCCGCCCCCACATTCCTTCACAGTCTATGCATGCCTTAGTGAACTGTAGGTCTAAACCTTGCTGTCCTTTGCTGAATGTTACCACTTATATAACCAGTGTTAATTTTCAGACACTTTTCTCACCAACTGCTTTTCCTTTTTGTTCCTGTTTCAACCTAGCATAAGAAACACAAGGTAAACCTTTGTAGTAAAGATTGTTGAGAGCCACTGGTGGTCGCTGCTGAGCCTAAGTAAAGGTAACTTACCCCTCTAATGCTGTCAGGAGAAGCAGGAATGACATTCTTTTCTTGATGTATAG
Seq C2 exon
GGTTGGATGTGTCCAGAGCCTGCGTCAGAAAGGGAGGACTTGGTATATTTTGAACATAAGTCATTTACTAAGTTGTCCAAGGAGCATGATGGAGAACTTACTGGTGACGAAGAAAACAGTGCTCATGCACTGGCACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAGAGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.337
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]