DreINT0036882 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11755179-11756494:+
Coord C1 exon
chr6:11755179-11755339
Coord A exon
chr6:11755340-11756192
Coord C2 exon
chr6:11756193-11756494
Length
853 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCTTTGATTTTATGTTTCAGGGC
3' ss Score
11.36
Exon sequences
Seq C1 exon
TGGCAGTTATGGAGGTCTCAGAGCTCGACGAGGGCCAGGTTTCCGTGGAGACGCTGCAGGAGTGGTGCGTGGAGGAACAGGCCATGGAGACTGACATTGCTCTGCTGCAGCAGGTGGAGGAGCTGGAGCGCAAAGTCACGTCTGCCAGCCTGCAGGTCAAG
Seq A exon
GTGAGGCTTTGTGCAGTTATACCACAGCCCTGCTTCCTAATATTACATCATTTCATGCTGTGCTTAAAGAAGTTTTTCTAAGCATACAGATGAAGTCAGAATTATTTGAATTTAGATTTTATTTCCTTTTTTAAATATTTACCAAATGATGTTTAACAGAGCAAGGAAATGTTCACGGTATGTCTGATAATATTTTTTCTTCGAGAGAAAGTCTTATTTGTTTTATTTCGGCTAGAATAAAAGCAGTTATAATTTTTTAAAAAACATTTTAAGGACTAAATTATTAGCCCCTTTAAGCTAATTGAACGCAAGTTAATTGCGTTATAATATAACCATCATTATACAATAACTTGCCTAATTTTCTAACCTGCTTAGTTAACTTAATGAACCTAGTTAAGCCTTTAAAATTATATTTGTTTTTAAGTTATGTTTATATAGTTTAGGTATTCAGCTTAAAGTGCAATTTAAAGGTTTAACTAGGTTAATTAGGAAAGTTTGGGTAATTAGACAAATCTTTGTATAAATTGTTTGTTCTGTAGACAACTGAAAAGCAATATTCCGTATACTATTGGCCTTAGAATGATTTTTGTTTTTAATTAAACTGCTTTTATTCTAGTTGAAATAAAACCAATAAGACTTCCTCCAGATATTGAAGGAATACTTTTAGGAAAAATCTCATTTAGGAAATATTTGCAAAAGAAAAAGAAATTCAGAGGAGGGCGAATCATTTTGACTCCAACTTTATATATTTATGGATAAAAAAATCTTAAAACACTAGGAAATTGTTTATCAGGAGCTACATTTTCAATTTAATAGTTTGATTTGATTTGAATTCTTTGATTTTATGTTTCAG
Seq C2 exon
GGCTGGACATACCCAGAGCCGCAGTCTGAGAGAGAGGACCTTGTCTATTTCGAGCACAAGCCCCTCCCCAAGCACCGCCCTGGGGCGGAGTCTCAGGAGGAGCGCAGCTCGGAGAAGGGTCTGATCCGGCGCCCCAGCAACCCGCTGGACATCGCTGTGATGCGGCTGGCAGAGCTGGAGCGCCACATCGAGAGAAGGTACCTGCGGAGCCCCTTAGGGACCACCATCCAGATCAAACTGGATAATGTGGGTACAGTCACTGTCCCCGCACCTGCTCCATCCACTAGCGCTGGAGGGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=NA C2=0.519
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCTCAGAGCTCGACGAG
R:
GTACCTTCTCTCGATGTGGCG
Band lengths:
351-1204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]