HsaINT0016843 @ hg38
Intron Retention
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159336942-159337772:-
Coord C1 exon
chr2:159337567-159337772
Coord A exon
chr2:159337078-159337566
Coord C2 exon
chr2:159336942-159337077
Length
489 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTTTCTATATTTCAATGCAGAAT
3' ss Score
7.78
Exon sequences
Seq C1 exon
GGTTGGATGTGTCCAGAGCCTGCATCAGAAAGGGAGGACTTGGTATATTTTGAACATAAATCATTTACTAAATTGTGCAAGGAGCATGATGGAGAATTTACTGGCGAAGACGAAAGCAGTGCACATGCACTAGAACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAAAGAAG
Seq A exon
GTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCGTTAGTGGTGATGGTGACGGGTAGGTTATTGAGATTAACTTGAAAAATTATTGTGCTTCTTTGCTAATTGGAGCCTATTTTCTATTGCCTGTTATCTATGTATCTTCTTGTATGTCTGTGATCCATACGGATCATGCTATTTGCATGGTGCTTTGTAAAAACTTTTTTTTTGTTATGTGCGTTGATAATCCTGCAAAGTGATCTTACATCTACCTGGTTGTGACTAAGCTTTGAGGCACGTAGCCACAGTCTGTGCACTACATCAAATTTAGTTGCTTAAACCTTATACTTATTGGCTGTTACATGTTTTTGTCATTGCTTGGCTTTCAGTGTGATGATTGTTTCACATTCCGTAATCGTAAGTGTGGACATGACCTACTTAATTTTTCTATATTTCAATGCAG
Seq C2 exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTATGGAGAAGGGCATTATCAGAAGCTCGCAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAATTACAGAAATCAATAGCATGGGAAAAATCAATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636:ENST00000392783:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENST00000426648fB10425
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGTCCAGAGCCTGCATC
R:
ACTTTCATAATTGATTTTTCCCATGC
Band lengths:
336-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development