MmuEX0049442 @ mm9
Exon Skipping
Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32629911-32631104:-
Coord C1 exon
chr2:32630851-32631104
Coord A exon
chr2:32630568-32630615
Coord C2 exon
chr2:32629911-32630077
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTGTTTTATAGACT
3' ss Score
8.81
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
TTTGCTCGAGGGCTGGTACCTCGTTAAGTTTCTACCCTGGCCCGCGTCGGCGTGCACTGCCCATAGGTTCTTTCCTTGACTTAGGCCTTGGCTTGCCTTGCTGAGTTTCTAGTGACTCTCGGAGGCGGGGCCAAGTGGGCGGGGCCTATGGACATCGTGGACCTGGTGCCTAGCAACAACGGAGCTAGGGAACCTCAGAGTATGCTTAGCCCAGAAGTTAGCCTAGAAACCTGGCCATGACAGACAGAAGCAAG
Seq A exon
ACTCAGAGAACTCCATCTGCCTCTAGCTCTAGAACGGGGTTATTAAAG
Seq C2 exon
GAGCCTCACAGTGCCCGTTCCCAGAAAACTCCAAAGCTAAAGGTTCCTGAAGCCCCAGAGAAGATCCTGCGACGCATCTTTGGGACCAGTCATGTGTTCTATGTTATGACAGATCCTACAAAACGAAGGATGATAGGATCAACAGTGCCTGCCAAAGTCAGAGAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.239
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134141=TPR_11=PU(7.4=23.8)
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTAGCAACAACGGAGCTAG
R:
GGGGCTTCAGGAACCTTTAGC
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: