MmuEX0007718 @ mm9
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59844100-59963754:-
Coord C1 exon
chr2:59963520-59963754
Coord A exon
chr2:59914927-59914968
Coord C2 exon
chr2:59844100-59844246
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTGTTTCTGTTGCAGGTT
3' ss Score
12.13
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
ATCTCCTGCTTCAATCTGCTGCTGGATAGGAACTAATCAGAGAGCGAGCGGCGGAAGACGGGGACGGAGGGAGCCAGGGCTTTCGCGATCACGGATCTCACCTCCACTCCAACTCCCTAGACTTTCTGGCAGGAATTAGAAGAGAAATAAGGAGGCGGTGGGGATTCCGAAAAGCTTAACCCGCACCCGGGAAGGGCGAAAATCCCTTCCCCCGCAACTCAGTTCGAAAGTGAAG
Seq A exon
GTTTCCCAACAGTGATGTCACAAGATTGACCACACTGACACA
Seq C2 exon
ATATGGAGTCTGGAGAACTGTTGCCATCCTCACCAGCCTCCTCCACTACACCAACATCATCTTCTGCTCCTTCCGTGGCTTCAGCAGTTTCAAAGAGCAGCCTTTCCACAGGAGCTGCTTCACTTAGTTCTACAGCCAGCCCATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987_MULTIEX2-1/6=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.671
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCAACTCAGTTCGAAAGT
R:
CCTGTGGAAAGGCTGCTCTTT
Band lengths:
137-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: