BtaEX6009645 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:36818173-36998314:+
Coord C1 exon
chr2:36818173-36818371
Coord A exon
chr2:36897618-36897660
Coord C2 exon
chr2:36998168-36998314
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTTCCTATTACAGGTT
3' ss Score
11.87
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
CGGAAGACGGAGAAGGAGGGCGTCCAGGGCTTTGCCGATCACAAATCTCACCTCCACTCCAACTCTCCTTATACTTTTCTTGCAAAAATAATAATAGAAATAAGGAGGTGGTGGGGTTTCCAAAACAAAAATCGTAACCTTTAACCATCTGGGGAAGGCAAAAATCCCATCCACCGCAACTCTCAGTTCGAAAGTAAAG
Seq A exon
GTTTCTCAACAGTGATGTCACAAGATTGACCACATTGATCACA
Seq C2 exon
ACATGGAGTCTGGAGAACGGTTACCATCCTCTACAGCCTCCTCTGCTACACCGACTTCATCCTCGATCCCTTCTGTGGCTTCATCAGTTTCAAAAGGCGGCCTTTCCACGGGAGCTGCTTCACTTAGCTCTACAATCAACCCATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'1-5,'1-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.551
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCCCATCCACCGCAACTC
R:
AAGGCCGCCTTTTGAAACTGA
Band lengths:
142-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]