RnoEX0014198 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46090746-46197372:-
Coord C1 exon
chr3:46197026-46197372
Coord A exon
chr3:46153334-46153375
Coord C2 exon
chr3:46090746-46090887
Length
42 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTGTTTCTGTTGCAGGTT
3' ss Score
12.68
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
CAACTTTCATTGTTAGAGAGAGGAGAGAGAGAGAAGCCTTGTTGGTTGACGTCACTTGGTTCATGAAGCCTTCGCCTAGAAGTGAAGCTGCTGAACAAACCTTGCGAAGAATCATCTCCTGCTTCAATCTGCTGCCGGATAGGAACTAATCAGAGAGAGAGCGGCGGAAGACGGGGACGGAGGGAGCCAGGGCTTTCGCGATCACGGATCTCACCTCCACTCCAACTCCCTAGACTTTCTTGCAGAAATTATAAGAGAAATAAGGAGGCGGTGGGGATTCGAAAAGCTTAGCCCGCACCCGGGAAGGGCGAAAATCCCTTTCCCCGCAACTCAGTTCGAAAGTGAAG
Seq A exon
GTTTCCCAACAGTGATGTCACAAGATTGACCACACTGACACA
Seq C2 exon
ATGGAGTCTGGAGAACGGTTGCCGTCCTCACCAGCCCCTTCCACTACACCAACATCGTCGGCTCCTTCCGTGGCTTCAGCCGTTTCTAAGAGCAGCCTTCCCACGGGAGCTGCTTCACTTGGCTCTGCAGCCAGCCCATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984_MULTIEX3-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.953
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGAAAAGCTTAGCCCGCA
R:
CCGACGATGTTGGTGTAGTGG
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]