HsaEX0007740 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160335086-160473203:-
Coord C1 exon
chr2:160472753-160473203
Coord A exon
chr2:160412334-160412376
Coord C2 exon
chr2:160335086-160335232
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTTTCCTATTGCAGGTT
3' ss Score
11.41
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
TCCCTTGGCTCCTTTAGGAGCTGATAGGTCATTTATTATTGGAACTGAAATGGTATAAACAATTCTCTCTCTTTTTTTCCCTTGTTAACAGCAACTTTCATTGTTAGAGAGAGGAGAGAGAGAGAAGCCTTGTTGGTTGACGTCACTTGGTTCATGAAGCCTTCGCCTAGAAGTGAAGCTGCTGAACAAACCTTGAGAAGAATCATCTCCTGCTTCAATCTGCTGCTGGATAGGAACTAATCAGAGAGAGAGAGGCGGAAGACGGAGAAGGAGGGAGTCGAAGGCTTTCCCGATCACAAATCTCACCTCCACTACAACTCTCTTTATACTTTTCTTGCAGAAATAATAATAGAAATAAGGAGGTGGTGGGGTTTCCAAAAATCTTAACCTTCAACCATCTGGGGAAAAGGCAAAAATCCCATCTACCGCAACTCTCAGTTCGAGAGTAAAG
Seq A exon
GTTTCCCAACAGTGATGTCACAAGATTGACCACATTGATCACA
Seq C2 exon
ATATGGAGTCTGGAGAACGGTTACCATCCTCAGCAGCCTCCTCTACTACACCAACTTCATCTTCGACACCTTCTGTGGCTTCAGTAGTTTCAAAAGGTGGCCTTTCCACTGGAGTTGCTTCACTTAGCTCTACAATCAACCCATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.571
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCATCTGGGGAAAAGGCA
R:
CTGAAGCCACAGAAGGTGTCG
Band lengths:
144-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)