MmuEX0002193 @ mm9
Exon Skipping
Gene
ENSMUSG00000085427 | 6430710C18Rik
Description
RIKEN cDNA 6430710C18 gene [Source:MGI Symbol;Acc:MGI:1923468]
Coordinates
chr2:72626175-72638334:-
Coord C1 exon
chr2:72638127-72638334
Coord A exon
chr2:72630234-72630332
Coord C2 exon
chr2:72626175-72626293
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCATTTTTCTTTTTCTTTAGACA
3' ss Score
9.49
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGGAGCGTGATATTCGCCAGCTTCAGATAGTTTAATTCTGTGGAACTGGAGAGGGTATAAATGGGAAAGACCTGAGAGGGTCTGTGGTGGCTGCTGCTCCCCCGGCTGCTCCTGGTTGGTGTTGCTGTGGTTTGTCAGAGATGAGAAGAAATTGAACTTGACCTAAGGAACTCAAGGCCCTTCATCAGCAGGAAGGACTCTAAAGAG
Seq A exon
ACAAAAAGCTCATAAGGAATCTTGATTACATTCCTGGGGGAACTAAAATGTGTGTTTGTACATGTAAAGAGTACATCGGATGAGTGTGTTTAGTAAGAG
Seq C2 exon
GTGTGACAACAGGAGCCTTCCTAGGGCTTGCTTCTGCCACCCTGGCTCCAGAGTCCTTGAAAAGCTCTGTCTTAAGGGCATAAGGAGAACGTGATAGAGTGGGACATGCGACATCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085427_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAAAGACCTGAGAGGGT
R:
GGAAGGCTCCTGTTGTCACAC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: