MmuEX0002193 @ mm10
Exon Skipping
Gene
ENSMUSG00000085427 | 6430710C18Rik
Description
RIKEN cDNA 6430710C18 gene [Source:MGI Symbol;Acc:MGI:1923468]
Coordinates
chr2:72788118-72800277:-
Coord C1 exon
chr2:72800070-72800277
Coord A exon
chr2:72792177-72792275
Coord C2 exon
chr2:72788118-72788236
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCATTTTTCTTTTTCTTTAGACA
3' ss Score
9.49
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGGAGCGTGATATTCGCCAGCTTCAGATAGTTTAATTCTGTGGAACTGGAGAGGGTATAAATGGGAAAGACCTGAGAGGGTCTGTGGTGGCTGCTGCTCCCCCGGCTGCTCCTGGTTGGTGTTGCTGTGGTTTGTCAGAGATGAGAAGAAATTGAACTTGACCTAAGGAACTCAAGGCCCTTCATCAGCAGGAAGGACTCTAAAGAG
Seq A exon
ACAAAAAGCTCATAAGGAATCTTGATTACATTCCTGGGGGAACTAAAATGTGTGTTTGTACATGTAAAGAGTACATCGGATGAGTGTGTTTAGTAAGAG
Seq C2 exon
GTGTGACAACAGGAGCCTTCCTAGGGCTTGCTTCTGCCACCCTGGCTCCAGAGTCCTTGAAAAGCTCTGTCTTAAGGGCATAAGGAGAACGTGATAGAGTGGGACATGCGACATCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085427_MULTIEX1-2/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAAAGACCTGAGAGGGT
R:
GGAAGGCTCCTGTTGTCACAC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types