MmuEX6100272 @ mm9
Exon Skipping
Gene
ENSMUSG00000026856 | Dolpp1
Description
dolichyl pyrophosphate phosphatase 1 [Source:MGI Symbol;Acc:MGI:1914093]
Coordinates
chr2:30247774-30251279:+
Coord C1 exon
chr2:30247774-30248032
Coord A exon
chr2:30249167-30249373
Coord C2 exon
chr2:30251179-30251279
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTCATTCTGCATTCCCTTAGCAT
3' ss Score
6.45
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCGAGTCCCCGCTCTCTGATTCGCCGCACGGGCCAGCCTCACGACCTGCACACTGAATGGCTGCGCCACTACCTGCAATCGGCCTCGGATTGGGTGCGTGGCGTCTCCCCGGCGTGATAGGTCAGGACCACCGCCCCCCTTGCTCCCCATTGGCTGCTCTGCGAAGCCCGGTCTCCGGGTAAGATGGCAGCGGACGGACAGTGCTCGCTCCCCGCTTCATGGCGGCCAGTGACCCTCACCCACGTCGAATACCCTGCAG
Seq A exon
CATAGCATCTCCCGGGTGCAAGGCCCTGGGCCAGCTCGGGGTTTGGAATGATGAAGTCCCTGCACTCTTGTTCTATGGAAAGTCTCTGCCCCTGAGGAGGGAAAACAGGCCTGGTGAAGGGGAGAGACCTGACTGGGGTCTCCACAGCTTCCCGACTCTCCGTCCTTGGCGTCAGAGTAGCTTCTTGGAGGGCTCATGGCCTTTCAG
Seq C2 exon
GTGATCTGTCTGGCCACCTCCTGGCCTACCTGAGCCTCAGCCCTATTTTTGTCGTTGTTGGTTTTTTGACTCTCATCATATTCAAGCGGGAGCTACACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026856-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0156916=PAP2=PU(0.8=2.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCCCGCTCTCTGATTCG
R:
AAATAGGGCTGAGGCTCAGGT
Band lengths:
305-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: