MmuEX6100272 @ mm10
Exon Skipping
Gene
ENSMUSG00000026856 | Dolpp1
Description
dolichyl pyrophosphate phosphatase 1 [Source:MGI Symbol;Acc:MGI:1914093]
Coordinates
chr2:30392254-30395759:+
Coord C1 exon
chr2:30392254-30392512
Coord A exon
chr2:30393647-30393853
Coord C2 exon
chr2:30395659-30395759
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTCATTCTGCATTCCCTTAGCAT
3' ss Score
6.45
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCGAGTCCCCGCTCTCTGATTCGCCGCACGGGCCAGCCTCACGACCTGCACACTGAATGGCTGCGCCACTACCTGCAATCGGCCTCGGATTGGGTGCGTGGCGTCTCCCCGGCGTGATAGGTCAGGACCACCGCCCCCCTTGCTCCCCATTGGCTGCTCTGCGAAGCCCGGTCTCCGGGTAAGATGGCAGCGGACGGACAGTGCTCGCTCCCCGCTTCATGGCGGCCAGTGACCCTCACCCACGTCGAATACCCTGCAG
Seq A exon
CATAGCATCTCCCGGGTGCAAGGCCCTGGGCCAGCTCGGGGTTTGGAATGATGAAGTCCCTGCACTCTTGTTCTATGGAAAGTCTCTGCCCCTGAGGAGGGAAAACAGGCCTGGTGAAGGGGAGAGACCTGACTGGGGTCTCCACAGCTTCCCGACTCTCCGTCCTTGGCGTCAGAGTAGCTTCTTGGAGGGCTCATGGCCTTTCAG
Seq C2 exon
GTGATCTGTCTGGCCACCTCCTGGCCTACCTGAGCCTCAGCCCTATTTTTGTCGTTGTTGGTTTTTTGACTCTCATCATATTCAAGCGGGAGCTACACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026856_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0156916=PAP2=PU(0.8=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCCCGCTCTCTGATTCG
R:
AAATAGGGCTGAGGCTCAGGT
Band lengths:
305-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types