MmuEX0048690 @ mm9
Exon Skipping
Gene
ENSMUSG00000026942 | Traf2
Description
TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]
Coordinates
chr2:25385807-25392669:-
Coord C1 exon
chr2:25392591-25392669
Coord A exon
chr2:25392196-25392294
Coord C2 exon
chr2:25385807-25385968
Length
99 bp
Sequences
Splice sites
3' ss Seq
CAAGGACATTCCTGTTCCAGGCC
3' ss Score
6.12
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
CTCTGGGCCCCAGAACTGTGCTGCCTGTGTCTATGAAGGCCTGTATGAAGAAGGCATTTCTATTTTAGAGAGTAGTTCG
Seq A exon
GCCTTTCCAGATAACGCTGCCCGCAGAGAGGTGGAGAGCCTGCCAGCTGTCTGTCCCAATGATGGATGCACTTGGAAGGGGACCTTGAAAGAATACGAG
Seq C2 exon
AGCTGCCACGAAGGACTTTGCCCATTCCTGCTGACGGAGTGTCCTGCATGTAAAGGCCTGGTCCGCCTCAGCGAGAAGGAGCACCACACTGAGCAGGAATGCCCCAAAAGGAGCCTGAGCTGCCAGCACTGCAGAGCACCCTGTAGCCACGTGGACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026942_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(23.1=33.3)
A:
NO
C2:
PF0217613=zf-TRAF=PU(96.2=94.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGTGTCTATGAAGGCCT
R:
CTCCTTTTGGGGCATTCCTGC
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: