GgaEX6014691 @ galGal3
Exon Skipping
Gene
ENSGALG00000009014 | TRAF2
Description
NA
Coordinates
chr17:921218-928466:-
Coord C1 exon
chr17:928388-928466
Coord A exon
chr17:927912-928010
Coord C2 exon
chr17:921218-921379
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTTACCCTTTCCATTGTAGGCT
3' ss Score
10.42
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TTCTGGACCTCAGAAGTGTGCGAGCTGCATTCAGGAAGGAATATACGAAGAAGGAATTTCTATTTTGGAAACGAGCTCT
Seq A exon
GCTTTCCCAGACAACGCAGCTCGTCGGGAGGTGGAAAGTCTGCCCGCTGTCTGTATTAATGAGGGCTGCACGTGGAAGGGGACTATTAAAGAATATGAG
Seq C2 exon
AGCTGCCATGAGGGGAACTGCCCGTTCCTGCTGATTGAGTGCCAGGCATGCAGAGGTGTGATCCCTCTGAATGAGAAGGAGCGCCACTCTGAGCGGGAGTGCCCTGAGAGAACCCTCAACTGCAAATACTGCAAATCACTTTTCTACTTCCCTGATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009014-'2-4,'2-1,3-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(23.1=33.3),PF131921=Thioredoxin_3=FE(33.8=100)
A:
PF131921=Thioredoxin_3=FE(41.6=100)
C2:
PF131921=Thioredoxin_3=PD(3.9=5.6),PF0217613=zf-TRAF=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCTGCATTCAGGAAGGAA
R:
AGTTGAGGGTTCTCTCAGGGC
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]