GgaEX6014691 @ galGal4
Exon Skipping
Gene
ENSGALG00000009014 | TRAF2
Description
TRAF2 protein [Source:UniProtKB/TrEMBL;Acc:E1BTY1]
Coordinates
chr17:539930-547178:-
Coord C1 exon
chr17:547100-547178
Coord A exon
chr17:546624-546722
Coord C2 exon
chr17:539930-540091
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTTACCCTTTCCATTGTAGGCT
3' ss Score
10.42
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TTCTGGACCTCAGAAGTGTGCGAGCTGCATTCAGGAAGGAATATACGAAGAAGGAATTTCTATTTTGGAAACGAGCTCT
Seq A exon
GCTTTCCCAGACAACGCAGCTCGTCGGGAGGTGGAAAGTCTGCCCGCTGTCTGTATTAATGAGGGCTGCACGTGGAAGGGGACTATTAAAGAATATGAG
Seq C2 exon
AGCTGCCATGAGGGGAACTGCCCGTTCCTGCTGATTGAGTGCCAGGCATGCAGAGGTGTGATCCCTCTGAATGAGAAGGAGCGCCACTCTGAGCGGGAGTGCCCTGAGAGAACCCTCAACTGCAAATACTGCAAATCACTTTTCTACTTCCCTGATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009014-'3-5,'3-1,4-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(23.1=33.3)
A:
NO
C2:
PF0217613=zf-TRAF=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCTGCATTCAGGAAGGAA
R:
AGTTGAGGGTTCTCTCAGGGC
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]