DreEX6013460 @ danRer10
Exon Skipping
Gene
ENSDARG00000101036 | traf2b
Description
Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]
Coordinates
chr5:53786945-53792636:+
Coord C1 exon
chr5:53786945-53787023
Coord A exon
chr5:53787290-53787388
Coord C2 exon
chr5:53792475-53792636
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGGTCTTTGACTCCCCATAGGCA
3' ss Score
9.44
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTCAGGGCCCATACCCTGCGAAGCCTGTCGTGCTGAGGGTATATTTGAAGAGGAAACGTCTGTGCTTAATATTGCAGTG
Seq A exon
GCATTTCCTGATAATGCAGCACGAAGAGAAATTGATAGCTTGCCTGCTAAATGCCCAAATGAAGGTTGTAGTTGGTCTGGGACACTGAAGGACTTTGAG
Seq C2 exon
AATCAACATGAAGGTCGCTGTGCCTTTGAACGTGTGAAATGTGAAGCATGTCAAGTGCTTATATTGCTCTCTGAGAAGGACCGTCACAATGAGCGGGAATGTGAAGCCAGAACCCTCAACTGTAAATACTGCAAAGTCACATTCAACTTTAAGGAAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101036-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(23.1=33.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTCGTGCTGAGGGTATA
R:
GGGTTCTGGCTTCACATTCCC
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]