HsaEX0066795 @ hg19
Exon Skipping
Gene
ENSG00000127191 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:12032]
Coordinates
chr9:139794046-139802683:+
Coord C1 exon
chr9:139794046-139794124
Coord A exon
chr9:139794874-139794972
Coord C2 exon
chr9:139802522-139802683
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGGGATATTCCTCTCCCCAGGCC
3' ss Score
7.18
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
CTCTGGGCCTCAGAACTGTGCTGCCTGTGTTCACGAGGGCATATATGAAGAAGGCATTTCTATTTTAGAAAGCAGTTCG
Seq A exon
GCCTTCCCAGATAATGCTGCCCGCAGGGAGGTGGAGAGCCTGCCGGCCGTCTGTCCCAGTGATGGATGCACCTGGAAGGGGACCCTGAAAGAATACGAG
Seq C2 exon
AGCTGCCACGAAGGCCGCTGCCCGCTCATGCTGACCGAATGTCCCGCGTGCAAAGGCCTGGTCCGCCTTGGTGAAAAGGAGCGCCACCTGGAGCACGAGTGCCCGGAGAGAAGCCTGAGCTGCCGGCATTGCCGGGCACCCTGCTGCGGAGCAGACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127191_MULTIEX2-1/7=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(23.1=33.3)
A:
NO
C2:
PF0217613=zf-TRAF=PU(96.2=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTGTGCTGCCTGTGTTC
R:
CTTCTCTCCGGGCACTCGT
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)