DreEX6011171 @ danRer10
Exon Skipping
Gene
ENSDARG00000030173 | traf2a
Description
Tnf receptor-associated factor 2a [Source:ZFIN;Acc:ZDB-GENE-071120-2]
Coordinates
chr5:28163208-28166919:-
Coord C1 exon
chr5:28166841-28166919
Coord A exon
chr5:28165350-28165448
Coord C2 exon
chr5:28163208-28163369
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGTAATTTCTTTTAGGCT
3' ss Score
10.18
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
CTCCGGACCACAGAAATGCAGTGCCTGCATAAAAGAGGACATATTTGAAGAGCCAACATCAATTTTGAAACAGGGCTGT
Seq A exon
GCTTTTCCTGATAATGCTGCTAAGAGAGAAGTTGAAGCTCTTGAAGCTGTTTGTATCAATGAGGAGTGCAGCTGGACAGGCACCATCAAAGAATACGAG
Seq C2 exon
GCAAACCATGAGGGTAAATGTGACTTCAGGATCCTGCCCTGCCCATCATGCAAAGAGCTTTTAAGAGCCAATGAACTTGAACGTCACAATGAGAGAGAATGCCCAGAGCGGACCCTAAATTGTAAATACTGCAAGGAGCCTTTTCATTTTAAAAACATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030173-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(23.1=33.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAGAAATGCAGTGCCTG
R:
CGCTCTGGGCATTCTCTCTCA
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]