RnoEX0093175 @ rn6
Exon Skipping
Gene
ENSRNOG00000006238 | Traf2
Description
Tnf receptor-associated factor 2 [Source:RGD Symbol;Acc:1310457]
Coordinates
chr3:2756060-2762622:-
Coord C1 exon
chr3:2762544-2762622
Coord A exon
chr3:2762162-2762260
Coord C2 exon
chr3:2756060-2756221
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGAGGGCGTTCCTGTTCCAGGCC
3' ss Score
8.6
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
Exon sequences
Seq C1 exon
CTCTGGGCCTCAGAACTGTGCTGCCTGTGTTCACGAAGGCCTGTATGAAGAAGGCATTTCTATTTTAGAGAGCAGTTCG
Seq A exon
GCCTTTCCAGATAACGCTGCCCGCAGAGAGGTGGAGAGCCTGCCAGCCGTCTGTCCCAATGATGGATGCACCTGGAAGGGGACCTTGAAAGAATACGAG
Seq C2 exon
AGCTGCCACGAAGGACTGTGCCCATTCCTGCTGACTGAGTGCCCTGCGTGTAAAGGCCTGGTTCGCCTCAGCGAGAAGAAGCACCACACTGAGCAGGAATGCCCCAAAAGGAGCCTGAGCTGCCAGCACTGCAGGGCACCCTGTAGCCATGCAGACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006238_MULTIEX1-2/7=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(23.1=33.3)
A:
NO
C2:
PF0217613=zf-TRAF=PU(96.2=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAACTGTGCTGCCTGTG
R:
CTGCTCAGTGTGGTGCTTCTT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]