MmuEX0037333 @ mm9
Exon Skipping
Gene
ENSMUSG00000061136 | Prpf40a
Description
PRP40 pre-mRNA processing factor 40 homolog A (yeast) [Source:MGI Symbol;Acc:MGI:1860512]
Coordinates
chr2:53016927-53018712:-
Coord C1 exon
chr2:53018592-53018712
Coord A exon
chr2:53018297-53018350
Coord C2 exon
chr2:53016927-53016951
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTGATTCCATTGAAACTAGGAT
3' ss Score
4.7
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CAACTATTGTCTAAATGCCCATGGAAAGAGTACAAATCTGATTCCGGGAAGCCTTATTACTATAATTCTCAAACAAAGGAGTCCCGCTGGGCCAAACCTAAGGAACTTGAAGATCTTGAAG
Seq A exon
GATACCAGAATACCATTGTTGCTGGAGGTCTTATTACAAAATCAAACCTGCATG
Seq C2 exon
CCATGATCAAAGCTGAAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061136-'18-10,'18-9,19-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.561 A=0.105 C2=1.000
Domain overlap (PFAM):
C1:
PF0039721=WW=WD(100=73.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTAAATGCCCATGGAAAGAGT
R:
TGCTTTCTTCAGCTTTGATCATGG
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types