Special

ENSG00000196504 @ hg19

Biotype
protein_coding
Gene Symbol
PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:16463]
Coordinates
chr2:153508107-153574511:-
Assembly
hg19
Other assemblies
hg38

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
8.45
23.08
0
Alternative 3'ss
194
chr2:153573946-153574139
-
91.55
23.08
0
Alternative 3'ss
0
NA
-
72.96
65.58
0
Alternative 3'ss
12
chr2:153520482-153520493
-
27.04
65.58
0
Alternative 5'ss
0
NA
-
87.69
40.93
0
Alternative 5'ss
126
chr2:153573744-153573869
-
12.31
40.93
0
Exon Skipping
54
chr2:153535570-153535623
-
72.48
77.61
0
Exon Skipping
80
chr2:153571064-153571143
-
4.59
24.29
1
Intron Retention
1229
chr2:153572641-153573869
-
9.36
20.41
0
Intron Retention
170
chr2:153520482-153520651
-
14.78
50.21
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000061136 Prpf40a 1-to-1
Mouse mm9 ENSMUSG00000061136 Prpf40a 1-to-1
Rat rn6 ENSRNOG00000004864 Prpf40a 1-to-1
Cow bosTau6 ENSBTAG00000048151 PRPF40A 1-to-1
Chicken galGal4 ENSGALG00000012526 PRPF40A 2-to-1
Chicken galGal3 ENSGALG00000012526 PRPF40A 2-to-1
Zebrafish danRer10 ENSDARG00000058467 prpf40a 2-to-1
Fruitfly dm6 FBgn0031492 CG3542 2-to-1
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