FBgn0031492 @ dm6
Biotype
protein_coding
Gene Symbol
CG3542
Description
The gene pre-mRNA processing factor 40 is referred to in FlyBase by the symbol DmelPrp40 (CG3542, FBgn0031492). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 2L:3023226..3026439. Its molecular function is described by: RNA binding. It is involved in the biological process described with: mRNA cis splicing, via spliceosome; mRNA splicing, via spliceosome. 17 alleles are reported. The phenotypes of these alleles manifest in: trichogen cell; mesothoracic tergum. The phenotypic classes of alleles include: visible; lethal; flightless; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, in adult female stages.
Coordinates
chr2L:3023226-3026439:+
Assembly
GENOMIC BROWSER[edit]
EXPRESSION VALUES[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)
EVENTS AND AS PROFILES[edit]
Associated events[edit]
Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Orthologous genes[edit]
| Organism | Assembly | Gene ID | Gene Name | Orthology Type
|
|---|---|---|---|---|
| Human | hg38 | ENSG00000110844 | PRPF40B | 1-to-2 |
| Human | hg38 | ENSG00000196504 | PRPF40A | 1-to-2 |
| Human | hg19 | ENSG00000110844 | PRPF40B | 1-to-2 |
| Human | hg19 | ENSG00000196504 | PRPF40A | 1-to-2 |
| Mouse | mm10 | ENSMUSG00000023007 | Prpf40b | 1-to-2 |
| Mouse | mm10 | ENSMUSG00000061136 | Prpf40a | 1-to-2 |
| Mouse | mm9 | ENSMUSG00000023007 | Prpf40b | 1-to-2 |
| Mouse | mm9 | ENSMUSG00000061136 | Prpf40a | 1-to-2 |
| Rat | rn6 | ENSRNOG00000004864 | Prpf40a | 1-to-2 |
| Rat | rn6 | ENSRNOG00000052539 | Prpf40b | 1-to-2 |
| Cow | bosTau6 | ENSBTAG00000016589 | PRPF40B | 1-to-2 |
| Cow | bosTau6 | ENSBTAG00000048151 | PRPF40A | 1-to-2 |
| Chicken | galGal4 | ENSGALG00000012526 | PRPF40A | 1-to-1 |
| Chicken | galGal3 | ENSGALG00000012526 | PRPF40A | 1-to-1 |
| Zebrafish | danRer10 | ENSDARG00000058467 | prpf40a | 1-to-1 |