Special

ENSMUSG00000023007 @ mm10

Biotype
protein_coding
Gene Symbol
Prpf40b
Description
pre-mRNA processing factor 40B [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99295087-99317018:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
58.23
100
0
Alternative 3'ss
3
chr15:99315480-99315482
+
41.77
100
0
Alternative 5'ss
0
NA
+
70.81
85.54
0
Alternative 5'ss
155
chr15:99295274-99295428
+
27.32
83.24
0
Exon Skipping
81
chr15:99303283-99303363
+
78.07
56.64
0
Exon Skipping
28
chr15:99305166-99305193
+
88.01
32.63
0
Exon Skipping
212
chr15:99301787-99301998
+
13.52
37.84
0
Intron Retention
7854
chr15:99295429-99303282
+
26.2
32.12
0
Intron Retention
144
chr15:99309800-99309943
+
42.21
87.1
0
Intron Retention
4542
chr15:99310036-99314577
+
11.09
51.16
0
Intron Retention
148
chr15:99314695-99314842
+
5.26
100
0
Intron Retention
210
chr15:99314981-99315190
+
27.41
100
0
Intron Retention
141
chr15:99315582-99315722
+
12.81
34.18
0
Intron Retention
94
chr15:99316149-99316242
+
12.8
100
0
Intron Retention
80
chr15:99316381-99316460
+
4.73
100
0
Intron Retention
675
chr15:99304491-99305165
+
14.18
40.91
0
Intron Retention
214
chr15:99305194-99305407
+
17.59
54.13
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000110844 PRPF40B 1-to-1
Human hg19 ENSG00000110844 PRPF40B 1-to-1
Rat rn6 ENSRNOG00000052539 Prpf40b 1-to-1
Cow bosTau6 ENSBTAG00000016589 PRPF40B 1-to-1
Chicken galGal3 ENSGALG00000012526 PRPF40A 2-to-1
Fruitfly dm6 FBgn0031492 CG3542 2-to-1