Special

ENSBTAG00000016589 @ bosTau6

Biotype
protein_coding
Gene Symbol
PRPF40B
Description
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr5:30373288-30387042:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
55.91
65.38
0
Alternative 5'ss
48
chr5:30384066-30384113
-
44.09
65.38
0
Exon Skipping
117
chr5:30375639-30375755
-
95.16
18.03
0
Exon Skipping
28
chr5:30384974-30385001
-
69.85
38.36
0
Exon Skipping
81
chr5:30387025-30387105
-
81.38
60.14
0
Intron Retention
147
chr5:30379880-30380026
-
37.24
66.38
0
Intron Retention
212
chr5:30375094-30375305
-
26.22
73.85
0
Intron Retention
249
chr5:30374749-30374997
-
33.95
40
0
Intron Retention
225
chr5:30384749-30384973
-
26.43
67.23
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000110844 PRPF40B 1-to-1
Human hg19 ENSG00000110844 PRPF40B 1-to-1
Mouse mm10 ENSMUSG00000023007 Prpf40b 1-to-1
Mouse mm9 ENSMUSG00000023007 Prpf40b 1-to-1
Rat rn6 ENSRNOG00000052539 Prpf40b 1-to-1
Chicken galGal3 ENSGALG00000012526 PRPF40A 2-to-1
Zebrafish danRer10 ENSDARG00000058467 prpf40a 2-to-1
Fruitfly dm6 FBgn0031492 CG3542 2-to-1