Special

ENSMUSG00000023007 @ mm9

Biotype
protein_coding
Gene Symbol
Prpf40b
Description
PRP40 pre-mRNA processing factor 40 homolog B (yeast) [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99125518-99147449:+
Assembly
mm9
Other assemblies
mm10

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
58.36
40.57
0
Alternative 3'ss
3
chr15:99145911-99145913
+
41.64
40.57
0
Alternative 5'ss
0
NA
+
72.66
84.54
0
Alternative 5'ss
155
chr15:99125705-99125859
+
27.34
84.54
0
Exon Skipping
81
chr15:99133714-99133794
+
80.1
47.91
0
Exon Skipping
28
chr15:99135597-99135624
+
86.08
37.67
0
Exon Skipping
198
chr15:99132218-99132415
+
9.6
26.55
0
Intron Retention
144
chr15:99140231-99140374
+
41.77
78.48
0
Intron Retention
4542
chr15:99140467-99145008
+
9.57
51.16
0
Intron Retention
210
chr15:99145412-99145621
+
26.19
71.88
0
Intron Retention
80
chr15:99146812-99146891
+
4.31
100
0
Intron Retention
675
chr15:99134922-99135596
+
14.89
40.91
0
Intron Retention
214
chr15:99135625-99135838
+
18.54
53.48
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000110844 PRPF40B 1-to-1
Human hg19 ENSG00000110844 PRPF40B 1-to-1
Rat rn6 ENSRNOG00000052539 Prpf40b 1-to-1
Cow bosTau6 ENSBTAG00000016589 PRPF40B 1-to-1
Chicken galGal4 ENSGALG00000012526 PRPF40A 2-to-1
Chicken galGal3 ENSGALG00000012526 PRPF40A 2-to-1
Zebrafish danRer10 ENSDARG00000058467 prpf40a 2-to-1
Fruitfly dm6 FBgn0031492 CG3542 2-to-1
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