MmuEX0037347 @ mm9
Exon Skipping
Gene
ENSMUSG00000023007 | Prpf40b
Description
PRP40 pre-mRNA processing factor 40 homolog B (yeast) [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99125518-99133794:+
Coord C1 exon
chr15:99125518-99125704
Coord A exon
chr15:99132218-99132415
Coord C2 exon
chr15:99133714-99133794
Length
198 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCCATGTATTTAAGTTT
3' ss Score
6.68
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GGAGCCGGGCCGGGCACACCGGGCCGGTTGGGGGCTCCGCTCCTCGGCGAGAGCAACCGGAGCCCCGGCCACGAAGGGGTGCGACCCCCCCACTGGCCCCGCCCTCCCGGCCGAAGCCCGGCCAATCAGAGCTGTTTTTACTGGCGAGTGGGCCGAGCCGGCCCAGCTGCTCTGAGGCTCTGGCATG
Seq A exon
TTTGTCTGCATGTACATCTGTGCATCATGCCTGTGCCTGGTACTCATGGAGGCCTACTGGAGTGTGTCAGATCCCTGGAACTGGGGGTATCCACACATGTGAGCCATCATGTGGGTGCTGGGAAATTGAACCCAGATCCTTGCTCCTGGAAGCAGCTGTCTTGAGTGCTGAGGGATGTCTCCTCCTGCCCCACCCCAG
Seq C2 exon
TCGGTTCCCGATTCTGGTCCCCGGCCCCCAGCAGCGCCTGCCCCCTTCCCACCGGGGCCCCCCATGATGCCACCACCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007_MULTIEX1-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.906
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCAACCGGAGCCCC
R:
GAAGGGTGGTGGCATCATGG
Band lengths:
220-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: