MmuEX0037347 @ mm10
Exon Skipping
Gene
ENSMUSG00000023007 | Prpf40b
Description
pre-mRNA processing factor 40B [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99295271-99303363:+
Coord C1 exon
chr15:99295271-99295428
Coord A exon
chr15:99301787-99301998
Coord C2 exon
chr15:99303283-99303363
Length
212 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCCATGTATTTAAGTTT
3' ss Score
6.68
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGGTAACGTCCCCGCGCGGGGGTGGAGAGGCCCGGGGCTGTCTCACAGCGCCCCCTGCGGCCCGGGCTCGAGCCGGGGAGGCGGGAGGGCCGCCGGGGCACCCGGGACCCTGAGGGAGGGCGAGGGGACCGAGGGGTGAGGAAAAGAAGCCCTGTAG
Seq A exon
TTTGTCTGCATGTACATCTGTGCATCATGCCTGTGCCTGGTACTCATGGAGGCCTACTGGAGTGTGTCAGATCCCTGGAACTGGGGGTATCCACACATGTGAGCCATCATGTGGGTGCTGGGAAATTGAACCCAGATCCTTGCTCCTGGAAGCAGCTGTCTTGAGTGCTGAGGGATGTCTCCTCCTGCCCCACCCCAGGTATTTTTGAACAG
Seq C2 exon
TCGGTTCCCGATTCTGGTCCCCGGCCCCCAGCAGCGCCTGCCCCCTTCCCACCGGGGCCCCCCATGATGCCACCACCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007_MULTIEX1-1/2=C1-2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.932
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTAACGTCCCCGCGC
R:
GAAGGGTGGTGGCATCATGG
Band lengths:
239-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types