MmuALTD0011079-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000023007 | Prpf40b
Description
PRP40 pre-mRNA processing factor 40 homolog B (yeast) [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99125604-99133794:+
Coord C1 exon
chr15:99125604-99125704
Coord A exon
chr15:99125705-99125859
Coord C2 exon
chr15:99133714-99133794
Length
155 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
ACTTTTCTCTCCCTCAACAGTCG
3' ss Score
10.46
Exon sequences
Seq C1 exon
CCCCCACTGGCCCCGCCCTCCCGGCCGAAGCCCGGCCAATCAGAGCTGTTTTTACTGGCGAGTGGGCCGAGCCGGCCCAGCTGCTCTGAGGCTCTGGCATG
Seq A exon
GTAACGTCCCCGCGCGGGGGTGGAGAGGCCCGGGGCTGTCTCACAGCGCCCCCTGCGGCCCGGGCTCGAGCCGGGGAGGCGGGAGGGCCGCCGGGGCACCCGGGACCCTGAGGGAGGGCGAGGGGACCGAGGGGTGAGGAAAAGAAGCCCTGTAG
Seq C2 exon
TCGGTTCCCGATTCTGGTCCCCGGCCCCCAGCAGCGCCTGCCCCCTTCCCACCGGGGCCCCCCATGATGCCACCACCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007-0-3,1-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.906
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCCGGCCAATCAGAG
R:
GAAGGGTGGTGGCATCATGG
Band lengths:
156-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: