MmuALTA0014222-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000023007 | Prpf40b
Description
PRP40 pre-mRNA processing factor 40 homolog B (yeast) [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99145622-99146000:+
Coord C1 exon
chr15:99145622-99145717
Coord A exon
chr15:99145911-99145913
Coord C2 exon
chr15:99145914-99146000
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
ACCTCTCCCTCTGCCTCTAGCAG
3' ss Score
10.07
Exon sequences
Seq C1 exon
GTCCGTGAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATCCGGCTCTTCCGAGAGTTCCTGCAGGTGTTGGAG
Seq A exon
CAG
Seq C2 exon
ACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007-30-35,30-34-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.901
Domain overlap (PFAM):
C1:
PF046908=YABBY=PU(29.2=78.8),PF063756=BLVR=PU(26.9=54.5)
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCTGCAGGTGTTGGAG
R:
CGCTTGCGATGGTGTTTCTTG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: