MmuALTA0014222-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000023007 | Prpf40b
Description
pre-mRNA processing factor 40B [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99315191-99315569:+
Coord C1 exon
chr15:99315191-99315286
Coord A exon
chr15:99315480-99315482
Coord C2 exon
chr15:99315483-99315569
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
ACCTCTCCCTCTGCCTCTAGCAG
3' ss Score
10.07
Exon sequences
Seq C1 exon
GTCCGTGAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATCCGGCTCTTCCGAGAGTTCCTGCAGGTGTTGGAG
Seq A exon
CAG
Seq C2 exon
ACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007-36-47,36-46-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.906
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(50.0=81.2)
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCTGCAGGTGTTGGAG
R:
CGCTTGCGATGGTGTTTCTTG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types