Special

ENSG00000110844 @ hg19

Biotype
protein_coding
Gene Symbol
PRPF40B
Description
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:25031]
Coordinates
chr12:50017403-50038449:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
64.68
41.48
0
Alternative 3'ss
3
chr12:50036710-50036712
+
35.32
41.48
0
Exon Skipping
81
chr12:50024328-50024408
+
77.64
68.47
0
Exon Skipping
28
chr12:50026379-50026406
+
91.69
31.17
0
Exon Skipping
165
chr12:50028882-50029046
+
96.39
29.89
0
Exon Skipping
111
chr12:50026797-50026907
+
91.18
41.4
0
Intron Retention
775
chr12:50024409-50025183
+
18.53
95.74
0
Intron Retention
82
chr12:50028239-50028320
+
5.68
79.71
0
Intron Retention
496
chr12:50028386-50028881
+
7.82
74.68
0
Intron Retention
369
chr12:50029257-50029625
+
5.4
80
0
Intron Retention
620
chr12:50030633-50031252
+
33.75
95.8
0
Intron Retention
148
chr12:50031368-50031515
+
31.79
90.86
0
Intron Retention
207
chr12:50036156-50036362
+
52.91
90.57
0
Intron Retention
315
chr12:50025328-50025642
+
6
82.14
0
Intron Retention
251
chr12:50036459-50036709
+
64.42
77.19
0
Intron Retention
206
chr12:50036800-50037005
+
31.97
97.79
0
Intron Retention
293
chr12:50037181-50037473
+
40.21
97.14
0
Intron Retention
108
chr12:50037536-50037643
+
27.17
98.14
0
Intron Retention
95
chr12:50037788-50037882
+
29.68
97.84
0
Intron Retention
670
chr12:50025709-50026378
+
23.51
62
0
Intron Retention
231
chr12:50026407-50026637
+
42.19
70.28
0
Intron Retention
302
chr12:50026908-50027209
+
13.07
66.56
0
Intron Retention
89
chr12:50027331-50027419
+
3.55
76.02
0
Intron Retention
239
chr12:50027876-50028114
+
5.4
65.24
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000023007 Prpf40b 1-to-1
Mouse mm9 ENSMUSG00000023007 Prpf40b 1-to-1
Rat rn6 ENSRNOG00000052539 Prpf40b 1-to-1
Cow bosTau6 ENSBTAG00000016589 PRPF40B 1-to-1
Chicken galGal4 ENSGALG00000012526 PRPF40A 2-to-1
Chicken galGal3 ENSGALG00000012526 PRPF40A 2-to-1
Zebrafish danRer10 ENSDARG00000058467 prpf40a 2-to-1
Fruitfly dm6 FBgn0031492 CG3542 2-to-1