Special

ENSG00000110844 @ hg38

Biotype
protein_coding
Gene Symbol
PRPF40B
Description
pre-mRNA processing factor 40 homolog B [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr12:49568218-49644666:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
64.4
87.95
0
Alternative 3'ss
3
chr12:49642927-49642929
+
35.6
87.95
0
Exon Skipping
28
chr12:49632596-49632623
+
92.39
15.23
0
Exon Skipping
165
chr12:49635099-49635263
+
96.41
29.89
0
Exon Skipping
111
chr12:49633014-49633124
+
91.34
43.25
0
Intron Retention
775
chr12:49630626-49631400
+
17.48
95.74
0
Intron Retention
82
chr12:49634456-49634537
+
5.8
80.76
0
Intron Retention
496
chr12:49634603-49635098
+
7.25
74.68
0
Intron Retention
369
chr12:49635474-49635842
+
4.8
80
0
Intron Retention
620
chr12:49636850-49637469
+
29.84
100
0
Intron Retention
148
chr12:49637585-49637732
+
26.54
93.13
0
Intron Retention
207
chr12:49642373-49642579
+
45.95
100
0
Intron Retention
315
chr12:49631545-49631859
+
5.8
82.14
0
Intron Retention
251
chr12:49642676-49642926
+
55.16
100
0
Intron Retention
206
chr12:49643017-49643222
+
25.47
97.79
0
Intron Retention
293
chr12:49643398-49643690
+
33.46
100
0
Intron Retention
108
chr12:49643753-49643860
+
22.47
100
0
Intron Retention
95
chr12:49644005-49644099
+
24.08
100
0
Intron Retention
670
chr12:49631926-49632595
+
22.59
60.63
0
Intron Retention
231
chr12:49632624-49632854
+
41.52
71.55
0
Intron Retention
302
chr12:49633125-49633426
+
13.53
100
0
Intron Retention
89
chr12:49633548-49633636
+
3.19
76.02
0
Intron Retention
239
chr12:49634093-49634331
+
5.55
65.24
0
Intron Retention
4083
chr12:49637825-49641907
+
24.28
88.56
0
Intron Retention
210
chr12:49642025-49642234
+
28.58
100
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000023007 Prpf40b 1-to-1
Mouse mm9 ENSMUSG00000023007 Prpf40b 1-to-1
Rat rn6 ENSRNOG00000052539 Prpf40b 1-to-1
Cow bosTau6 ENSBTAG00000016589 PRPF40B 1-to-1
Chicken galGal3 ENSGALG00000012526 PRPF40A 2-to-1
Fruitfly dm6 FBgn0031492 CG3542 2-to-1