HsaEX0050377 @ hg38
Exon Skipping
Gene
ENSG00000110844 | PRPF40B
Description
pre-mRNA processing factor 40 homolog B [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr12:49631860-49632880:+
Coord C1 exon
chr12:49631860-49631925
Coord A exon
chr12:49632596-49632623
Coord C2 exon
chr12:49632855-49632880
Length
28 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTCTTTCTTCGGCAGACG
3' ss Score
9.88
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATACCAGGAATGGTACCTCCGATGATGCCAGGAATGCTGATGCCAGCGGTGCCTGTCACCGCAGCG
Seq A exon
ACGGCTCCGGGTGCGGACACCGCCAGCT
Seq C2 exon
CTGCTGTGGCTGGGACAGGCCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110844-'20-23,'20-21,22-23
Average complexity
S
Mappability confidence:
90%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0039721=WW=PU(3.2=11.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAATGGTACCTCCGAT
R:
CTGTCCCAGCCACAGCAG
Band lengths:
82-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development