RnoEX0070112 @ rn6
Exon Skipping
Gene
ENSRNOG00000052539 | Prpf40b
Description
pre-mRNA processing factor 40 homolog B [Source:RGD Symbol;Acc:1565411]
Coordinates
chr7:140968466-140969438:+
Coord C1 exon
chr7:140968466-140968531
Coord A exon
chr7:140969174-140969201
Coord C2 exon
chr7:140969413-140969438
Length
28 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTCTTTCTTCGGCAGACG
3' ss Score
9.88
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATACCAGGAATGGTCCCTCCGATGATGCCGGGGATGCTGATGCCAGCCGTGCCTGTCACTGCAGCG
Seq A exon
ACGGCTCCGGGTGCGGACACCGCCAGCT
Seq C2 exon
CTGCTGTGCCTGGCACAGGCCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052539-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0039721=WW=PU(3.2=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]