RnoEX0070114 @ rn6
Exon Skipping
Gene
ENSRNOG00000052539 | Prpf40b
Description
pre-mRNA processing factor 40 homolog B [Source:RGD Symbol;Acc:1565411]
Coordinates
chr7:140969174-140969672:+
Coord C1 exon
chr7:140969174-140969201
Coord A exon
chr7:140969413-140969438
Coord C2 exon
chr7:140969562-140969672
Length
26 bp
Sequences
Splice sites
3' ss Seq
TTCTTTGCCTTCTTTTCTAGCTG
3' ss Score
11.08
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ACGGCTCCGGGTGCGGACACCGCCAGCT
Seq A exon
CTGCTGTGCCTGGCACAGGCCCTCCG
Seq C2 exon
AGGGCCTTATGGAGTGAACACGTGGCCCCTGACGGGCGCATCTACTACTACAATGCAGATGATAAGCAATCCGTGTGGGAGAAGCCCAGCGCACTCAAGTCTAAAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052539-'4-6,'4-5,5-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.432
Domain overlap (PFAM):
C1:
NO
A:
PF0039721=WW=PU(3.2=11.1)
C2:
PF0039721=WW=PD(90.3=75.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]