MmuEX1020938 @ mm10
Exon Skipping
Gene
ENSMUSG00000023007 | Prpf40b
Description
pre-mRNA processing factor 40B [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99305166-99305651:+
Coord C1 exon
chr15:99305166-99305193
Coord A exon
chr15:99305408-99305433
Coord C2 exon
chr15:99305541-99305651
Length
26 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGCCTTCTCTTCTAGCTG
3' ss Score
11.27
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ACGGCTCCGGGTGCGGACACCGCCAGCT
Seq A exon
CTGCTGTGGCTGGAACAGGCCCTCCG
Seq C2 exon
AGGGCCTTATGGAGTGAGCACGTAGCCCCTGACGGGCGCATCTACTACTACAATGCTGATGATAAGCAATCCGTGTGGGAGAAGCCCAGCGTACTCAAGTCTAAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007-'10-11,'10-10,11-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.889 C2=0.322
Domain overlap (PFAM):
C1:
NO
A:
PF0039721=WW=PU(3.2=11.1)
C2:
PF0039721=WW=PD(90.3=75.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types