BtaEX6020833 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016589 | PRPF40B
Description
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr5:30384478-30385001:-
Coord C1 exon
chr5:30384974-30385001
Coord A exon
chr5:30384723-30384748
Coord C2 exon
chr5:30384478-30384588
Length
26 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGGCTTCTTTTCTAGCTG
3' ss Score
9.87
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
ACGGCTCCGGGTGCGGACACCGCCAGCT
Seq A exon
CTGCTGTGGCTGGGACAGGCCCTCCG
Seq C2 exon
AGGGCCCTGTGGAGCGAGCATGTAGCCCCTGACGGGCGCATCTACTACTACAACGCTGACGACAAGCAGTCCGTGTGGGAGAAGCCCAGCGTGCTCAAGTCCAAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016589-'4-5,'4-4,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.378
Domain overlap (PFAM):
C1:
NO
A:
PF0039721=WW=PU(3.2=11.1)
C2:
PF0039721=WW=PD(90.3=75.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]