BtaEX0028623 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016589 | PRPF40B
Description
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr5:30384723-30385736:-
Coord C1 exon
chr5:30385671-30385736
Coord A exon
chr5:30384974-30385001
Coord C2 exon
chr5:30384723-30384748
Length
28 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTCTTTCTTCGGCAGACG
3' ss Score
9.88
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATACCAGGAATGGTACCTCCCATGATGCCAGGAATGCTGATGCCAGCAGTGCCTGTCACCGCAGCG
Seq A exon
ACGGCTCCGGGTGCGGACACCGCCAGCT
Seq C2 exon
CTGCTGTGGCTGGGACAGGCCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016589_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0039721=WW=PU(3.2=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAATGGTACCTCCCATG
R:
CTGTCCCAGCCACAGCAG
Band lengths:
81-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development