HsaINT1028105 @ hg38
Intron Retention
Gene
ENSG00000110844 | PRPF40B
Description
pre-mRNA processing factor 40 homolog B [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr12:49637733-49642024:+
Coord C1 exon
chr12:49637733-49637824
Coord A exon
chr12:49637825-49641907
Coord C2 exon
chr12:49641908-49642024
Length
4083 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATGCACTGCTGTACCCACAGGAC
3' ss Score
7.75
Exon sequences
Seq C1 exon
GCTCCACCCCTCTGGACTTATTCAAGTTCTATGTGGAGGAGTTGAAGGCACGATTCCATGATGAAAAGAAGATCATTAAGGACATCCTTAAG
Seq A exon
GTGAGGGAGGCTGGGGTTATGGATGGATACAGGATGGATGCAGGGCACACTCCCTGCAGAGGACTCCCTGATAAGTCCTGTTTTGCAGAAGCATTACAGCTTGGTTCAGCAGATATCTACTGTGATCCTTTACTGCACACTAGGGATACAGTAATGAATACACAATTTCTACCACAGGAGCTCATGGTCTAATAGGAAGATATACATGAGAACTGTTATACAAAGGGGCAAGTGTTATTACAGAGACAGGAATCTGAAGAACTAACATTTGAACTGTGCATTTAGAAATTTGTAGGTGGAAGAGGTTGGAGTGTACACGGGGTACTAAGAGCAAAGGCAAGGGGGTGGAAAGGGCATGCCAGGTCTGAGGAGGAAGAAGCATAGCTAATTGTAAACTGGTAGCACACAGATTGTTCTTTCTGGCCTGTACAGTGTTCTGTAAAAATTTGGAATTTGTTGCTAACATTTTAAAACCAGGAAACTTCACATAGAAAATCTGAATCTTTAGCTTCTCTTGTCAATATGGATTATCTAGCAGTACTGAGCTGGATTTGCAAGGCATTCTGCAGACTCAAGCTGAGATGCCACTTTAGAAAGGGCAAGTCATCCTTCTCACCATTCCTTAGTGCCTTCTTGATACTGTCGCAAGTGTCAGCTGCCATTTACCATCACACATGGCCTGTTGCTCTTCTTCTACTGGAGAAGAGAAATAGTTCTCAATATTTACATCTTATCAAAAGTGGAAAAGTGAGTGAGTGATGGACTAAACCTTGTGTTCCAAAAGAAAAAAACAAAGAGCATATTTCTTTATGGAAGTGAAGATTCTAATGCATTTGAGGAGATAATACAGTACAGTGGTTAGGAGCGGGACTGGAGGCAGACTGCCTACAGTAAAAGTCTAGCTTAACTGCTTGCTAGTTGTGTGACCTTGGATAGGTCACTTGACCTTTCTGACCCTGTTTCCTCATCTAAAAAATGGTGAGTGTTCCACCAGAGTACACCTAATTACAGAGATTAAATGGTACCTGGGTTGAAAGGGATCTGGAAATAAAGCTAGAAATGTCTCACTGCATATACATTTCTTTGAAGTACTGTTTTGCCTTACAAATTCACGTAGGTGTTGCATTTTAACACCATATTACCTATTTAATATAAATTTAATATTTTAAATTACTTACCATTAGGTAAGATGTATCATACTGTCCTGAGGTATCCTCTCTTTCTCTGGAACCACATGCCCCAGCTTGGAAGTAGAGCCCTGCATGTAAAGTGCCTTGAATGCTAAAATAAGAAATTTGGATTTTTCTCTCGTAAGTAATGAGGAACCGGGGAATGATCAGATTAGATGGTGTATAGTAGAACCTTTCAGTCTAGAGTACGTACTTATGTCCTTAGGGAAGGTGGTGGTGCTAGGTAGAGCAGTTCTTGAAGCCTCAAGATACTAAAACTGATAGTGGTAATTCAAATAGTCATATTCATTTCACTTATCCCCAGACCTCTCTCCTACTGTTGGGGCTACTTGGTACAAAAGTCCAAGAAGCACTAGATGCTAGGAGCTGGGTTAGAGGGATGGAAGAGGGTGAGCAGGGAGAAAAGTCAGTAGGCTGTGCAGGAATCTTGTAGGAGGTGATCCTAGCCGGGGGCAGTGGGGACAGCAGAAGAGAGCAGGCTGTAGCGCTCCAGCTGTTCTTCTGAGACACTCTGGGTTTCTATGTAGGTGCCTTGAGACAAGCAAGGGTTGGAGTTGAGTATGGGGGGATTTGGTGCTGCTTCCTGTTTTCAAGTGAAGCAGCTTGAATCTTTTTTATGCATAAAGGTTCTACATAAGATTTCTATTTTAATAAACTGTTTCTGCTGTTTAAAAAAAAAAGGGAGAATTCAACACCAGTGGGATAGAGTCACTAAGTAGAATTGATAGATTTTGTGAAATGGAGGGAAAGGAAGGAATCAGAGGTGTCAGGGCAGTGGATGATGGCACTATTGATAAGGATAAAACAAGAAGAGCAAGGCTGTAGAAAATAGGAATTCTATTTGGGGAATTACTCTCAAAGCAAATATATTTTAAAACAGAATAATCGTATAAAGTAGAAATGCCTTATCCTGGGATAGCTAAATTTTATTGGACAATTAACTTTTAGCCACAGAGTGGCTGGTTGATAGGCCTGTAGGGGCCTATCCTCACTGAGTCCTGTCTCTCCACACAACCTGAGAAAGCAACTTTTTTAGACAGTTCCCTTCCTCTTTCCCCATTTGGGTTCCTGCCTATGGAGGGCAGATGAGCCCAGGAGTCCCTCTTGCTTTCCACAGCCAGGCAGACCATGATGGTGCCTTTCATCCCATAGGATAATGCAAAGAGCCCTGGACTTAGAACAGGCAGACAGATCCGGGTCAGGGAGATCCATGGAGGATGCTCATGAGAAATATATTCTCTTGAGATCTGTTGAATTTTAAGTGTCTGAAATATCCAGTCTAGGATGTTTGAAAATCAGGAGAGATGAAGGATGAGATTGCGAGGGAGTACAGATTGGGTAGTGAAAGAGGACTAAGTGCTGTTCTCAGGAACATGCATATGCAAGAGAATAAAAGGTCAGAGAGGGTGTGACCTGGAGAGGGGAGTGTTGAAGAAGTAAGTGGTAGAGGCACTGAGGACCAGATGAGTGAGGACAAAGAAGGCGGCCTTGGATTTGGCTAGTAGACACAAGCAACCTTTGGGAGAGTAGAGTCATGGAGGTGGCATGGGGGCAGCACATGTTTTAGAGTCAGATTACTCCTGGTTGCTTATTGGCTCTGAGACCTCCGTAAGTTCCGTGTCTCTGAGCCTGTTTGCTCACCTGTAAATCAGGGATAATTCATAGGTAAGGTTGTGAGAATTAAATAACATCTGTAAAGTGTCTAATAGGTTCTCAATAAATGTTTATTCCTTTTCCTTTCTGCTGCATTTCAAGAGGTTTTGAAACAATGGAAAAGAGCAGAGGTAGTTAGCTTGATGAAGGGGAGAGCATGGTGGAAAGGATGTTCCAGGTTAGGTGAGGTGTCTGCTTGATGGAAGGAGCCAGTAACAAGGGTGACTTGGAGCTTTCAATTCCCTGAGAATGAATGCTGTGTTGATAAGGACTGTAGCAGGGTTGAGGAAGTACCCTTGGAAAGAAGAAAGAGGAGCACACCTCTGCCATCAGCAAAAAGGCCAGAGGAGGTGAGAGCTATGTGGAGGGAGAGAAAGGGAATCTGGCCTGTGCTTAACTGACGTGAGAGCCAGACTTTGAACTCCAGTGGCTTCATTTACCACTCATGTCATCTTGGGCCAACTGAGATCACTTTTCTAAGCCTCTGCTTCACTGGAATGTTGTGAGGCCTAAATGAGAAGCATAGAGCCTGGCCTGTGGACATGTTTTTAGTATTGGTGGGGAGCTGCACACCTGGTGGCCTCCGTTTCTCCCATGGACTAAGTCATCTGGGTGGGTGTGGTGCTTGAAAGCAGACACTTTGGGGATAGAGAGCCCCCCCAGGGTAGGGTTCTTGCCCAGCCGTATATCAGCTGTGAGACCTTGGGCAAGTGCTCTAGTTTCTCTGAACCTTGGTTTCTCCTTCTGTGTAAAATTAGGATACTAGGACCTATTCTTAAATGTAGAACCAAGAGGATTAAATGAGATAATGTGTGAAACACTCATCATGGTACCTGGTACATAGTAAGCACTCAATAAATAGACCCAAAGGGTAGGGGCCAGCAAATGTTGATTGAGAATGCATGGAAGCACTGCTGAGCAGCAGGAGGGCCCAGCTGGGGCCAGAGCTTTAAGCCAAAGGAACAAAAGTTAATTTTGAGAAACTCAGCATTAATCAGCAGTTGGGAGACATCTCCCAACCCCTTCAGCTCTGTGTGACATCCAAACCAAGGGTAGGCATGGGGGCTTAATTGTCAAGTGATGAGGACTTGGATAACTTGGTTTCTAATGCAGACCACAGTCCTGTGGATCTCTTCCAGAGGCAAGGGCCTTCTTGACCATCTGTAATGTGACCACTCTGCCTGCCAGCTTTGGCCTCAGGCACGTGGTGCCCCTGCTTCATGCACTGCTGTACCCACAG
Seq C2 exon
GACCGGGGCTTCTGCGTGGAGGTGAACACGGCCTTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCCGCACTGGACGCAGGCAACATCAAGCTGACCTTCAATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110844:ENST00000380281:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(17.9=32.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains