BtaINT0118360 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016589 | PRPF40B
Description
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr5:30375639-30379879:-
Coord C1 exon
chr5:30379788-30379879
Coord A exon
chr5:30375756-30379787
Coord C2 exon
chr5:30375639-30375755
Length
4032 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATGCGCTGCTGTGCCCACAGGAC
3' ss Score
9.43
Exon sequences
Seq C1 exon
GCTCCACCCCTCTGGACTTGTTCAAGTTCTATGTGGAAGAGTTGAAGGCCCGATTCCATGATGAGAAGAAGATCATAAAGGACATCCTTAAG
Seq A exon
GTGAGGGAGGCCTGGGGCTGTGGATGGATGCAGGCTGGATGCAGGGCTGCTCCCAGGACAGGGCTCCCTGATAAATCCTGTTTTGTGGGAGCATTGCAACTCAGTTCAGGAGATAGCTATTGTGATCCTTTCTTTATACAGAAATGAACAAGATACAATTTCTGCCTAGAAGGAGCTCAGGGTCTAATAGGAAGAGAGACATGGCAAGTAGATAGACATTACAGAGGGGCAAGGGTTATTATTACAGAGATGAGAATCAGAAGAATTGCCATTTAAACTGCACCTCTAAGAATGAGGAGGTGGGGGAGGATGGAGGCCAGGGGTGTAGGGTGCCGCAGGAGCAAAGAGGAGCAGGAAGCACAACTAGTCATAAACTAGTTTCACACAAGTATTCTCCTTCTGCCTGTACAGTGTTTTAGAAAAACCTGGAATTTGTTGCTAACATTTTAAAATCAAGAGATTACAATTAAAATCTGGATCTTCAGCATCTCTTGGAAATTTGCATTATCTAGCAGCGCTAGGTTGGCTTTGAGAAGCATTCAGTGGGCTAAAGCTGAGATACTAAGGCTTTTTAGAAGGGGCATATCCTCCTTATCTGTCCTAACTCCTCCCTGTCACATCCGTAACACGAGAGCAAAGTCACCTACAATTTACCATCTCCATGCTGGAGAGTTCCTCAGTATTCATGTCTATCAAAGAGGAAAAAGTGAGTGATGGACTGAGAGAGCCCTGTGTTTCGGAAAAGATAACAAAGAGAAGCATATTTCTTTGTGGAGATAAAGACTCTTCTCATGAGTTTCGGGGAGCAGTGTGCACCGTGGTTAGGAACAAGACTGTGAAGGCCGACTGTGGGGTTGAAAGTCCATCTTAACCACTTAGAAGTTTTGCGACTTTGAGCAGATTACTTAATTTTTCTGAGCGTGTTTCCTCATCTGAAAAGTGGGGAATATTCCCCCAAACTTCACCTGATTATCAGCAGGAGTAACTTGGTACCCGAGATGAAGAAGGTCTCAGAATAAAGCTAGGAATGTCTCACTGCACACACGTTTCTTTTAAGTCCCATGTCTTGCCTTAAAATTCATGCAGGCGCTGTACTTTAATACCGTAACACTTACCTGTTAATATTTTAAAATTACTTACCATTAGGTAACATATATTGTATTGTCCTGTGGCCTCCTCTATTTCTCTATACCCCAGTTGGGAAGGAGAGCCCTGCATATAAAATTCTTTGAATGCTAAAATAAGGAAATTGGATTTTTATCTTGTAAGTAATGGGGAGGCGGGGAATGATGTCTTGGAAAAGCCCCAGTGGTGGTGTAGAGCCCTGCCCGCAGCCAGAGCACTTGTATGCGCAGGGATGGAGTGGTAGGGAGACAGGACTTGAGGCCTCAGGACGCAGAAAGTGATAGTGGCAAGTGATTCAGGTCAGTTCTGAGCTTGAGTCATCCTCTTCTGACTCACCCCTAGACTGCTCCCTTGCTGTTGGGGCCCTTGGGAGAAAAGTCTGGGCAGCCGTGGACTCTCGAGGCAGGGTTTGAAGTGTGAGGGGTGAGCAGAGAGACCAGGCAGGAGCTGCTGTGTGGTCTAGGTGGGGATGGCCGGTGAGCACAGCTGGGGTGCTCCAGTTGCTTCTGAAATCCCGAGGTTGGCTCACGGGGGCCTTGGGACAAGCCGGAGGGGGCGGGGTGGAGGGATTTTTGCTCCTTCCTTTATTTTCAAGTATAACTGCTTGTTTCTCTTATGGAATGAGGGTTCTACTTAAGATTTTTATTTAAAAAAAAAAGCATCTGCTGATTTAAAAAAAGGGTTTCAAACCAGTAGGCTAGACTCACTCAGAAGTAGAACTGACACATTTGTGTGTGTGTGTGAAATTGAGGGAAGGAAGGAGTGAGTTGGAGATAGCAGGGGTGGATTGATGGTAAGGATTAAGCAGGAAGAACAGGGCTGGAGAAAACAGGAATTCCATTTGGGAAATTGTTCTCATAAAGCAACCAGGGGCAGGGAGGAATAGAGCAAATACCATATTTTAAATATGATAATCGCATAAGGTAGAAATATCTTATCCAGGAAGAGTTAAATTTTATTGGACACTTAACTTTTAACCCCTCAGTGGCTGGTACTGCTGACAGGCCTGTAGGAGCCCTATCCTTGCTGAGGCCTGTCTCTCCACACCTCCTGAGGACAGTCTTTGGTCAGTTCCCCTTCCTGTTGCCCCCTTTTGGGCTCCTGCCTCTGGAAGGGAGGTGAACCCAGGGCCCTGAGGCCATCTACCCGCCAGGCAGACTGTGGACTGTGATGACACTCCACATCCCATAGGGTAATGCAGAGTCCTGAACTCGGAGAAGCTGAAAGTCAGAAGATCTGGGCCCATCCATGGGAGTGGGGAGTGGAGTATGGGGTGGGGGCTCCCAGAAAATGAATTATCTTGGGATCTGCTGAACTTGAAGTGTCTGTGAAATATCCAGTCTAGAATGGGTCTGAAAGTCAGGAGAGAGGTGAGGGGTGGGATTGCTAGGAACAGTGTGGGACAGGCACATAAGACAAGAGAGGTGGTAAAAGGGGTCGGAGACAAGCGGGGACCCCGGAGAAGGAAGGACTGCAGAAGTGAACAGAGGCTAGAAGACTGAGGACTCAGAAGGGGTCCCTGGAGTTCTTAGGACATGAGCAACCTCTAGGGGAACAGCGTCCATGAAGAGGGTAAAATGAGTGCAGCACAGGCTTTAGTTATATAACTCCTGGCTGTTTATTGGTTGAGACCTCTGCAAGTTATATAGTGTCTCTGAGCCTCAGTTTCCTTATCTGTAAAATGAGGATAATATAAATGCAAGGTCATGAAGTTAAATGATAACATTTGTAGTATCTTGCTCATTAGTAGGTTTAATAAATGTTTTCCTTTGTGCTACATTTAAAGATTGTGAAACAGAGAGACAGAAGCAGAGGTTATTAGCTTGAGGAAGGTGAGAGCAGGGTGGAAAGGGTATTCCAGGTTAAGTGAGGTGCGTACTTGACAGAAGGAACCAATGAAGAGGTGAGATCGAAGTCTGCAGTTCCCTAAGCGAGAGAGATGTATGTCTGAGAAGAGCTGGAGAGCATGGGCTGAGGAATCCCTCTTGGAAGCAGCAGGAAGAGTATGCCTGTGCCGTCAGCAGGGGGCCAGAGCAGGTTCCAGATGAGCAGAGGTAGTAGAAGGGAACCTGGGCCTCTGCCTCAGACCTCACGCTTCAGTGGCTCCACTTTCCACTGAGTCGTCTTGGGCCAAGTGAGACAACTCTCCTACAGCCTGCTCACTGGCGTGTTGTGAGGCTTAGGTGAGAAGCACAGCGCCTAGTCCATGGTGCTTTATAGTGTGACGTGTCCTTAATAATGCTGGGGAGATGTACAGCTGATGGCCTTTATTTTTCATGATTGTGGGTGTAGTGCTTAAAAGTAGGGACTTCATCATTAGAAAGACCTGGGGTAGAATTCTTGTCCAGCCATATGTTAGCCTTGAAGACCTTGGGCAGTTACTCTAGTTTCTCTCAACCTTGGTTTCTTCTTCCACATAAAATTAGGACCTGTGCTTTAGTTCAGATACGTGAGGATTAAATGAGATAATGTGTGTGAGGCACTCAGCATGGTACCTGGTACATAGTAAGCACTCATAAACACAGCCGTAGATGTTGACTAAGAAAGAATACAGGGAACTTATGACCCAGCAATGGCTCAAGCTTAAGCCAAAGGGACAAAGAATCCGTTGTCAGAAACACAGGCATCTATCAGACGGAGAACATGTACCTTGAACACCTACCCGTGATCCAGCCTTGCCAGTTCCCTGTGACAGCTAAGCCAAGGGCTGGTATGGGAGGTTTAATTATCAGATGGGGGAGGACTTGAATGACTTGGTCTCCGAAGTGCATCCCCGTCCTGTGGATCCCTTCCGGGGGAGGGGGCTACTTGAGCATCTGTAGTCTGACCCGTGCCTGCCCTGGAGGCAGCCAACTTCAGGTTCAGGCCTGTGGTGCCCCCCTGCTTCATGCGCTGCTGTGCCCACAG
Seq C2 exon
GACCGGGGCTTCTGCGTGGAGGTGAACACAGCCTTCGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGATGCAGGCAACATCAAGCTGACTTTCAATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016589:ENSBTAT00000022067:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(17.9=32.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]