Special

ENSBTAG00000048151 @ bosTau6

Biotype
protein_coding
Gene Symbol
PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr2:43585376-43643096:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
79.23
55.56
0
Alternative 3'ss
12
chr2:43636699-43636710
+
20.77
55.56
0
Alternative 5'ss
0
NA
+
89.54
52.17
0
Alternative 5'ss
126
chr2:43585460-43585585
+
9.78
52.17
0
Exon Skipping
54
chr2:43623152-43623205
+
71.48
62.94
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000196504 PRPF40A 1-to-1
Human hg19 ENSG00000196504 PRPF40A 1-to-1
Mouse mm10 ENSMUSG00000061136 Prpf40a 1-to-1
Mouse mm9 ENSMUSG00000061136 Prpf40a 1-to-1
Rat rn6 ENSRNOG00000004864 Prpf40a 1-to-1
Chicken galGal4 ENSGALG00000012526 PRPF40A 1-to-1
Chicken galGal3 ENSGALG00000012526 PRPF40A 2-to-1
Zebrafish danRer10 ENSDARG00000058467 prpf40a 2-to-1
Fruitfly dm6 FBgn0031492 CG3542 2-to-1