BtaEX0028618 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048151 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr2:43622803-43624758:+
Coord C1 exon
chr2:43622803-43622923
Coord A exon
chr2:43623152-43623205
Coord C2 exon
chr2:43624734-43624758
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTGATTCCACTGAAACTAGGAT
3' ss Score
3.84
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CAACTTTTATCTAAATGCCCTTGGAAGGAGTACAAGTCTGACTCTGGAAAGCCTTATTATTACAATTCTCAAACAAAAGAATCTCGCTGGGCCAAACCTAAAGAACTTGAAGATCTTGAAG
Seq A exon
GATACCAGAATACCATTGTTGCTGGAAGTCTTATTACAAAATCAAACCTGCATG
Seq C2 exon
CAATGATCAAAGCTGAAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048151_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=0.053 C2=0.833
Domain overlap (PFAM):
C1:
PF0039721=WW=WD(100=73.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTATCTAAATGCCCTTGGAAGG
R:
CTGCTTTCTTCAGCTTTGATCA
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development