RnoEX0070105 @ rn6
Exon Skipping
Gene
ENSRNOG00000004864 | Prpf40a
Description
pre-mRNA processing factor 40 homolog A [Source:RGD Symbol;Acc:1311401]
Coordinates
chr3:38701909-38703663:-
Coord C1 exon
chr3:38703543-38703663
Coord A exon
chr3:38703245-38703298
Coord C2 exon
chr3:38701909-38701933
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTGATTCCACTGAAACTAGGAT
3' ss Score
3.84
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CAACTATTGTCTAAATGCCCATGGAAAGAGTACAAATCTGATTCTGGGAAGCCTTATTACTATAATTCTCAAACAAAAGAGTCCCGCTGGGCCAAACCTAAGGAACTTGAAGATCTTGAAG
Seq A exon
GATACCAGAATACCATTGTTGCTGGAGGTCTTATTACAAAATCAAACCTGCATG
Seq C2 exon
CCATGATCAAAGCAGAAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004864_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.123 C2=1.000
Domain overlap (PFAM):
C1:
PF0039721=WW=WD(100=73.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTAAATGCCCATGGAAAGAGT
R:
TGCTTTCTTCTGCTTTGATCATGG
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]