ENSMUSG00000061136 @ mm10

Biotype

protein_coding

Gene Symbol

Prpf40a

Description

pre-mRNA processing factor 40A [Source:MGI Symbol;Acc:MGI:1860512]

Coordinates

chr2:53134704-53191284:-

Assembly

mm10

Other assemblies

mm9

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

Pre-implantation embryo development
Ribosome-engaged transcriptomes of neuronal types
Neural differentiation time course
Muscular differentiation time course
Spermatogenesis cell types
Reprogramming of fibroblasts to iPSCs
Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event

Type

Length

Coordinates

Strand

PSI Average

PSI Range

Annotated Functions

MmuALTA0014214-2/3

Alternative 3'ss

26

chr2:53145890-53145915

-

74.12

61.47

0

MmuALTA0014214-3/3

Alternative 3'ss

38

chr2:53145890-53145927

-

25.76

60.55

0

MmuALTD1041592-1/2

Alternative 5'ss

0

NA

-

41.05

70.6

0

MmuALTD1041592-2/2

Alternative 5'ss

126

chr2:53191023-53191148

-

58.95

70.6

0

MmuEX0037333

Exon Skipping

54

chr2:53159263-53159316

-

87.27

73.75

0

MmuEX0037335

Exon Skipping

80

chr2:53188448-53188527

-

3.54

17.37

1

Orthologous genes[edit]

Organism	Assembly	Gene ID	Gene Name	Orthology Type
Human	hg38	ENSG00000196504	PRPF40A	1-to-1
Human	hg19	ENSG00000196504	PRPF40A	1-to-1
Rat	rn6	ENSRNOG00000004864	Prpf40a	1-to-1
Cow	bosTau6	ENSBTAG00000048151	PRPF40A	1-to-1
Chicken	galGal4	ENSGALG00000012526	PRPF40A	1-to-1
Chicken	galGal3	ENSGALG00000012526	PRPF40A	2-to-1
Zebrafish	danRer10	ENSDARG00000058467	prpf40a	1-to-1
Fruitfly	dm6	FBgn0031492	CG3542	2-to-1