HsaALTA0006719-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000110844 | PRPF40B
Description
pre-mRNA processing factor 40 homolog B [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr12:49642580-49642978:+
Coord C1 exon
chr12:49642580-49642675
Coord A exon
NA
Coord C2 exon
chr12:49642930-49642978
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCTTCCTCTGCCTCTAGCAGACT
3' ss Score
6.68
Exon sequences
Seq C1 exon
GTCCGTGAGCGTTTTGTGTGTGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATCCGGCTCTTCCGGGAGTTCCTACAGGTGCTGGAG
Seq A exon
NA
Seq C2 exon
ACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110844-47-56,47-55-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.877
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(50.0=81.2)
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCAGATCACCCTGGAGT
R:
CTTTCGGCCTTTGGTGTGGAG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development