BtaEX0028624 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016589 | PRPF40B
Description
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr5:30386035-30397423:-
Coord C1 exon
chr5:30393268-30397423
Coord A exon
chr5:30387025-30387105
Coord C2 exon
chr5:30386035-30386178
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTCTCCCTCAACAGTCG
3' ss Score
10.46
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
CCTATATTCGGAATGAATACTTGGGTCCCGCCTCTGGTCCTCAGAGCAAGCGCACGAGCCGCTCCATGCGCTTGGGCAGCCCAGCACGAAGGCCAAGAAGCGGAGGGCGGAGGTCGGAGGCCTGCAGGCAGGGCGGGAAAGCAGGGGAGTAGCGGGTGGGCGCTCAGAGGTCAAGCTCCACGTTCAGGCCGCGAGCTGCAGGCCTGCGTCGGCCCTCGTGCAGTCAGAGCCCGGAGCAGGCGTGCCCCGCCCCTAGTGGGCGGACCCCGGACCCGGCGGCGCGGGGGCGGGGCCTGGCTCTCCGCGCCGGGGGCGGGGCCGGACCCGGGCTCTCCGGGCCGGTGGAGGACCCGGCTGGTCGGTGGGAGCTACCGGAGCCCCGGCCACCAAGGGGTGCGACCCCCCACTGGCCCCGCCTTCCCGGCTGCGGTCAGCCAATCAGAGCGGCTTTTACTGGCGGGTGGGCCGAGCCGGCCCAGCTGCTCCGAGGCTCTGGCATG
Seq A exon
TCGGTTCCCGATTCTGGTCCCCGGCCCCCAGCAGCGCCTGCCCCCTTCCCACCGGGGCCCCCCATGATGCCACCACCCTTC
Seq C2 exon
ATGCCTCCTCCAGGAATCCCCCCACCTTTTCCTCCAATGGGGCTCCCTCCCATGAGTCAGAGACCACCAGCCATCCCCCCCATGCCACCTGGCATCATGCCCCCAATGCTCCCACCGATGGGGGCACCACCACCACTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016589_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.667 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGAGCGGCTTTTACTGGC
R:
GGAGCATTGGGGGCATGATG
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development